jaredgk / PPP
Repository for pipeline code
☆24Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for PPP
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 weeks ago
- A repo contains historical and updated MTEC libraries.☆15Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆26Updated 3 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- ☆28Updated 2 weeks ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆25Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- Likelihood-based Selective Sweep Detection☆35Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆23Updated 5 years ago
- ☆19Updated 7 months ago
- ☆11Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆22Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆13Updated 4 years ago
- machine learning applications for dadi☆13Updated 7 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 3 years ago
- Invertory of TE-gene isoforms☆9Updated last year
- ☆10Updated 9 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆39Updated 5 years ago
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- A haplotype analysis toolkit for natural variation study.☆27Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- ☆13Updated 11 months ago