brentp / toolshed
python stuff I use
☆19Updated 5 years ago
Alternatives and similar repositories for toolshed
Users that are interested in toolshed are comparing it to the libraries listed below
Sorting:
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- reference free variant assembly☆33Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- Flexible omics pipeline☆18Updated 9 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- blast, shmlast☆22Updated 4 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set☆16Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 7 years ago
- ☆19Updated 8 years ago
- Simple matching of HTS samples based on HLA typing☆13Updated 8 years ago
- Build sourmash databases for genbank.☆12Updated 2 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- ☆37Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago