python stuff I use
☆20Feb 16, 2026Updated 5 months ago
Alternatives and similar repositories for toolshed
Users that are interested in toolshed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 9 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- fast bloomfilter☆21May 13, 2014Updated 12 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 11 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- python access to UCSC genomes database☆138Aug 27, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TFFM framework☆13Sep 22, 2025Updated 10 months ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- ☆15Mar 7, 2016Updated 10 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Process management library☆18Aug 17, 2022Updated 3 years ago
- Browser based application for viewing bam alignments☆56Dec 16, 2016Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 4 years ago
- ☆11Dec 20, 2024Updated last year
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- personal redirect server☆17Aug 11, 2016Updated 9 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 11 years ago
- Tools for producing pseudo-cgh of next-generation sequencing data☆18Sep 5, 2016Updated 9 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 8 months ago