python stuff I use
☆20Feb 16, 2026Updated 3 months ago
Alternatives and similar repositories for toolshed
Users that are interested in toolshed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 9 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- TFFM framework☆13Sep 22, 2025Updated 8 months ago
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- ☆11Dec 20, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 5 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- A curated list of bioinformatics bench-marking papers and resources.☆15Nov 27, 2019Updated 6 years ago
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 9 months ago
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 7 years ago
- python access to UCSC genomes database☆136Aug 27, 2020Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 4 years ago
- RNA Fusion Detection and Quantification☆18Oct 31, 2018Updated 7 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- A sequence demultiplexer for the Illumina HiSeq technology☆21Apr 29, 2013Updated 13 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆13Sep 5, 2017Updated 8 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- A Python program which gets the lyrics for a song and outputs them to stdout☆23Nov 16, 2016Updated 9 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- genomic alignment similarity search tool☆18May 15, 2025Updated last year
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 10 years ago
- ☆19Mar 14, 2022Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 5 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 11 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 7 years ago