favorov / stereogene

Related projects ⓘ

Alternatives and complementary repositories for stereogene

• ratschlab / mmr
  A tool for Read Multi-Mapper Resolution
  ☆24Updated 7 years ago
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 6 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 6 years ago
• sarbal / AuPairWise
  ☆12Updated 4 years ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated 3 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 3 months ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated 10 months ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 5 months ago
• Grice-Lab / AlignerBoost
  AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …
  ☆11Updated 2 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 3 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated last year
• Cibiv / trumicount
  Correctly counting molecules using unique molecular identifiers (UMIs)
  ☆9Updated 3 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 8 years ago
• FischerJo / FAME
  ☆14Updated last year
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 6 years ago
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 3 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• markrobinsonuzh / CrispRVariants
  ☆23Updated 4 years ago
• hammerlab / awesome-clonality
  A curated list of awesome clonality and tumor heterogeneity resources
  ☆15Updated 5 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated 3 months ago
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last year
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆30Updated 5 months ago
• brentp / poverlap
  significance testing over interval overlaps
  ☆29Updated 4 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• ernfrid / diagnose_dups
  A tool to examine duplicate read characteristics in a BAM file
  ☆12Updated 6 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 3 months ago