arahuja / pytcga
DEPRECATED: Store and query public TCGA data
☆11Updated 8 years ago
Alternatives and similar repositories for pytcga:
Users that are interested in pytcga are comparing it to the libraries listed below
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 7 years ago
- A framework for network analysis and display of SNPs☆18Updated 8 years ago
- Universal RObust Peak Annotator☆15Updated last year
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Liability Estimation for Case-Control Studies☆9Updated 4 years ago
- Genetics training camp☆21Updated 4 years ago
- ☆11Updated 7 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- ☆12Updated 7 years ago
- probability of mendelian error in trios.☆11Updated 8 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆44Updated 4 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago
- Predict mutated T-cell epitopes from sequencing data☆27Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month