arahuja / pytcgaLinks
DEPRECATED: Store and query public TCGA data
☆11Updated 8 years ago
Alternatives and similar repositories for pytcga
Users that are interested in pytcga are comparing it to the libraries listed below
Sorting:
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- ☆11Updated 8 years ago
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Updated 7 years ago
- ☆12Updated 8 years ago
- DSDE Deep Learning Club☆40Updated 6 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 7 years ago
- Genetics training camp☆21Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Empirical Bayes methods for single cell data☆16Updated 4 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Python client for MyVariant.info web services.☆23Updated 5 months ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 7 years ago
- Universal RObust Peak Annotator☆16Updated last year
- What's The Function of these genes?☆22Updated 8 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- probability of mendelian error in trios.☆11Updated 9 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago