CostelloLab / GSEA-InContextLinks
Gene Set Enrichment Analysis in Python
☆11Updated 6 years ago
Alternatives and similar repositories for GSEA-InContext
Users that are interested in GSEA-InContext are comparing it to the libraries listed below
Sorting:
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- ☆21Updated 8 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 5 months ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 7 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- ☆23Updated 8 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- ☆12Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 6 months ago
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 2 months ago
- ☆17Updated last year
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year