CostelloLab / GSEA-InContext

Related projects ⓘ

Alternatives and complementary repositories for GSEA-InContext

• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated last year
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆18Updated 4 months ago
• thomsonlab / popalign
  ☆11Updated 3 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 5 months ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• mozack / vdjer
  V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
  ☆29Updated 2 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 6 years ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆27Updated 4 years ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 5 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆17Updated 3 weeks ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 5 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆30Updated 3 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 6 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆25Updated 8 years ago
• slowkow / allelefrequencies
  📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
  ☆19Updated 6 months ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• lasersonlab / phip-stat
  Analysis tools for PhIP-seq experiments
  ☆12Updated 2 years ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated 5 months ago
• lkuchenb / imseq
  IMSEQ - IMmunogenetic SEQuence Analysis
  ☆15Updated 6 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 3 years ago
• Simon-Coetzee / StatePaintR
  ☆10Updated 6 years ago
• maggiecrow / DEprior
  ☆15Updated 3 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 2 months ago
• flo-compbio / xlmhg
  XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.
  ☆13Updated last year