Demonstrating the PRoot program
☆11Jul 29, 2016Updated 9 years ago
Alternatives and similar repositories for proot-wrapper
Users that are interested in proot-wrapper are comparing it to the libraries listed below
Sorting:
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Mar 31, 2015Updated 10 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 10 years ago
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 8 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- ☆12Oct 29, 2025Updated 4 months ago
- Benchmark on adaptive banded algorithm☆19Feb 26, 2023Updated 3 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 3 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- ☆15Apr 2, 2025Updated 11 months ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Jun 26, 2018Updated 7 years ago
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- ☆12Sep 11, 2025Updated 5 months ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- python stuff I use☆19Feb 16, 2026Updated 2 weeks ago
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Jan 22, 2016Updated 10 years ago
- High-performance error correction for Illumina resequencing data☆74May 31, 2016Updated 9 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Dec 4, 2018Updated 7 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago