Estimate linkage disequilibrium between unphased loci
☆11Jun 9, 2015Updated 10 years ago
Alternatives and similar repositories for covld
Users that are interested in covld are comparing it to the libraries listed below
Sorting:
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- ☆22Jul 7, 2022Updated 3 years ago
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated 10 months ago
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 3 months ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆11Oct 8, 2025Updated 4 months ago
- Implementation of the Tower Method, a novel approach to handling missing values.☆12Mar 12, 2024Updated last year
- SV detection from paired end reads mapping☆38Jul 19, 2010Updated 15 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 6 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 9 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆49Nov 13, 2023Updated 2 years ago
- Module for analysing admixture graphs☆29Apr 30, 2018Updated 7 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 11 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 2 years ago
- logistic factor analysis☆16Jan 29, 2026Updated last month
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 4 years ago
- ☆30Oct 14, 2022Updated 3 years ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 8 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 10 months ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- GEAR [GEnetic Analysis Repository], contact chenguobo@gmail.com;☆21Dec 31, 2021Updated 4 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆16Jul 7, 2022Updated 3 years ago
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- ☆22Jul 28, 2022Updated 3 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 3 years ago
- a tool for processing .bed and .vcf files☆21Apr 25, 2017Updated 8 years ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago