Expectation-Maximization algorithm for Allele-Specific Expression
☆22May 9, 2023Updated 3 years ago
Alternatives and similar repositories for emase
Users that are interested in emase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Personal diploid genome creation and coordinate conversion☆31Apr 1, 2025Updated last year
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- kallisto index tag extractor☆19Jul 6, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆26Sep 21, 2018Updated 7 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆12Mar 18, 2026Updated 2 months ago
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆16Mar 20, 2018Updated 8 years ago
- stageR package☆13May 8, 2026Updated 3 weeks ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Oct 30, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- personal genome constructor☆11May 29, 2025Updated last year
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- ☆30Oct 6, 2021Updated 4 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated 11 months ago
- ☆12Dec 1, 2021Updated 4 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Mar 16, 2021Updated 5 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆36May 4, 2026Updated 3 weeks ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 5 months ago
- parallelized blat with multi-threads support☆56Jan 23, 2025Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆102Feb 27, 2023Updated 3 years ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated 4 months ago