Expectation-Maximization algorithm for Allele-Specific Expression
☆22May 9, 2023Updated 2 years ago
Alternatives and similar repositories for emase
Users that are interested in emase are comparing it to the libraries listed below
Sorting:
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆16Mar 20, 2018Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Apr 1, 2025Updated 11 months ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Oct 30, 2024Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 5 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated last month
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Mar 16, 2021Updated 4 years ago
- Shiny server configuration with Nginx load balancer☆26May 4, 2024Updated last year
- Tools for working with BUS files☆102May 27, 2025Updated 9 months ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- stageR package☆13Feb 28, 2023Updated 3 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- Scripts and documentations on the MCSC decontamination method☆10Jun 13, 2023Updated 2 years ago