churchill-lab / emaseLinks
Expectation-Maximization algorithm for Allele-Specific Expression
☆21Updated 2 years ago
Alternatives and similar repositories for emase
Users that are interested in emase are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 7 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆14Updated 2 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ☆13Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- fast webservices based query tool for large sets of genomic features☆25Updated 6 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago