churchill-lab / emase
Expectation-Maximization algorithm for Allele-Specific Expression
☆21Updated last year
Related projects ⓘ
Alternatives and complementary repositories for emase
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- Chromatin segmentation in R☆19Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- ☆12Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- ☆12Updated last week
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆30Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- a set of NGS pipelines☆24Updated this week
- iread☆23Updated 3 years ago