A package for simulating RNA-seq library preparation with parameter estimation
☆23Mar 3, 2014Updated 12 years ago
Alternatives and similar repositories for rlsim
Users that are interested in rlsim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Sep 24, 2013Updated 12 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 11 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 8 years ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 3 months ago
- collection of small scripts or how-tos that don't fall under a separate project☆21Oct 18, 2017Updated 8 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 11 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 12 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 13 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 8 years ago
- Phylogenetic plots for R and ggplot☆26Oct 3, 2012Updated 13 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- ☆19Nov 2, 2018Updated 7 years ago
- ☆43Apr 20, 2016Updated 10 years ago
- ☆14Feb 4, 2015Updated 11 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- BEETL☆98Apr 15, 2023Updated 3 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- Reference-based compression of SRA data☆40Mar 26, 2013Updated 13 years ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 9 years ago
- Build and Deliver Software with Containers☆33Aug 19, 2026Updated last week
- Fully indexable dictionaries - access/rank/select operations☆13Sep 10, 2018Updated 7 years ago