zeeev/vcflib external links

---

GitHub - View repository

GitHub.dev - Open in online code editor

Star history - Growth chart over time

deps.dev - Dependencies and security vulnerabilities

Gitingest - Export source code for LLM usage

Repomix - Export source code for LLM usage

uithub - Export source code for LLM usage

Close

zeeev/vcflib

Readme badge preview -

If you own this repo, copy the snippet below and add it to your README.md

---

Copy

[![RelatedRepos](https://img.shields.io/badge/related-repos-yellow)](https://relatedrepos.com/gh/zeeev/vcflib)

Close

zeeev / vcflibView on GitHubMore

• External links
• Readme badge

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

☆20Mar 22, 2017Updated 8 years ago

Alternatives and similar repositories for vcflib

Users that are interested in vcflib are comparing it to the libraries listed below

• tseemann / kounta

  View on GitHub
  🧮 🔢 Generate multi-sample k-mer count matrix from WGS
  ☆11Jan 17, 2026Updated last month
• nextstrain / auspice.us

  View on GitHub
  ☆13Nov 26, 2025Updated 3 months ago
• jaudoux / kamix

  View on GitHub
  Index and query k-mer matrices in BGZF
  ☆12Apr 30, 2018Updated 7 years ago
• gogetdata / ggd-recipes

  View on GitHub
  conda recipes for genomic data
  ☆84Jul 31, 2021Updated 4 years ago
• GoreLab / Sorghum-HapMap

  View on GitHub
  Hapmap-v1
  ☆12Feb 3, 2020Updated 6 years ago
• krasileva-group / plant_rgenes

  View on GitHub
  ☆13Oct 30, 2019Updated 6 years ago
• B10KGenomes / annotation

  View on GitHub
  Scripts used in the annotation of B10K genomes
  ☆15Jun 1, 2020Updated 5 years ago
• cbcrg / piper-nf

  View on GitHub
  RNA mapping pipeline
  ☆18Jun 3, 2018Updated 7 years ago
• pontussk / popstats

  View on GitHub
  Population genetic summary statistics
  ☆40Sep 28, 2023Updated 2 years ago
• phylogeography / SpreaD3

  View on GitHub
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
  ☆17Apr 28, 2023Updated 2 years ago
• MadsAlbertsen / miscperlscripts

  View on GitHub
  Small collection of random useful perl scripts
  ☆21Jun 23, 2014Updated 11 years ago
• KHP-Informatics / illumina-array-protocols

  View on GitHub
  processing illumina SNP arrays
  ☆19Feb 3, 2017Updated 9 years ago
• vsbuffalo / snakemake-tutorial

  View on GitHub
  Snakemake tutorial materials
  ☆19Mar 9, 2020Updated 5 years ago
• mojaveazure / angsd-wrapper

  View on GitHub
  Utilities for analyzing next generation sequencing data
  ☆17Sep 28, 2018Updated 7 years ago
• namsyvo / IVC

  View on GitHub
  Integrated Variant Caller
  ☆17Mar 15, 2018Updated 7 years ago
• kcleal / SV_Benchmark_CMRG_GIAB

  View on GitHub
  Structural variant benchmark
  ☆22Mar 4, 2025Updated 11 months ago
• johnlees / 23andme-impute

  View on GitHub
  Scripts and advice to run IMPUTE2 on 23 and me raw data
  ☆22Mar 18, 2014Updated 11 years ago
• paudano / kestrel

  View on GitHub
  Mapping-free variant caller for short-read Illumina data
  ☆20Apr 2, 2020Updated 5 years ago
• jtleek / jtleek.github.io

  View on GitHub
  Website
  ☆16Aug 30, 2025Updated 6 months ago
• lh3 / rtgeval

  View on GitHub
  Wrapper for RTG's vcfeval; DEPRECATED!
  ☆21Apr 8, 2016Updated 9 years ago
• CFSAN-Biostatistics / snp-pipeline

  View on GitHub
  SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…
  ☆66May 5, 2023Updated 2 years ago
• IARCbioinfo / needlestack

  View on GitHub
  Multi-sample somatic variant caller
  ☆52Jan 27, 2022Updated 4 years ago
• ansariazim / treeBreaker

  View on GitHub
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Jul 13, 2018Updated 7 years ago
• broadinstitute / wdltool

  View on GitHub
  ☆18Jan 24, 2018Updated 8 years ago
• benedictpaten / sonLib

  View on GitHub
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆31Sep 15, 2022Updated 3 years ago
• eswlab / orphan-prediction

  View on GitHub
  methods for orphan gene prediction paper optimization
  ☆25Dec 24, 2021Updated 4 years ago
• zeeev / smartie-sv

  View on GitHub
  calling SVs from Blasr contig level alignments
  ☆54Mar 9, 2018Updated 7 years ago
• tjblaette / ngs

  View on GitHub
  Next-generation sequencing analysis pipelines & scrips
  ☆10Nov 25, 2020Updated 5 years ago
• robinandeer / puzzle

  View on GitHub
  Variant caller GUI + genetic disease analysis
  ☆22Apr 29, 2020Updated 5 years ago
• yanboANU / Kmer2SNP

  View on GitHub
  ☆26Aug 10, 2021Updated 4 years ago
• nickloman / nanopore-basecalling-scripts

  View on GitHub
  Some simple scripts to ease management and local basecalling of millions of FAST5 files
  ☆25Nov 25, 2017Updated 8 years ago
• tsackton / linked-selection

  View on GitHub
  ☆24Jun 9, 2017Updated 8 years ago
• johanzi / gwas_gemma

  View on GitHub
  Perform GWAS with gemma in a simple pipeline
  ☆27Apr 26, 2025Updated 10 months ago
• CDCgov / tostadas

  View on GitHub
  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
  ☆28Feb 19, 2026Updated last week
• shenglin-liu / vcf2sfs

  View on GitHub
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Feb 13, 2020Updated 6 years ago
• sbg / smart-variant-filtering

  View on GitHub
  ☆29Feb 17, 2021Updated 5 years ago
• ZhiGroup / RaPID

  View on GitHub
  ☆32Dec 3, 2021Updated 4 years ago
• gaitat / GenomeUPlot

  View on GitHub
  The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.
  ☆32Dec 10, 2022Updated 3 years ago
• lganel / SVScore

  View on GitHub
  Prioritize structural variants based on CADD scores
  ☆29May 7, 2020Updated 5 years ago