zeeev / vcflibLinks
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
☆20Updated 8 years ago
Alternatives and similar repositories for vcflib
Users that are interested in vcflib are comparing it to the libraries listed below
Sorting:
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ☆81Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Structural variant caller☆55Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- finshingTool☆54Updated 8 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆31Updated 3 years ago
- ☆46Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Specifications for PacBio® native file formats☆31Updated 11 months ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- ☆49Updated last year
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- compare sequences to a shared root reference sequence.☆24Updated 4 years ago