zeeev / vcflibLinks
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
☆20Updated 8 years ago
Alternatives and similar repositories for vcflib
Users that are interested in vcflib are comparing it to the libraries listed below
Sorting:
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- UCSC Nanopore☆43Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- ☆81Updated 5 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- ☆48Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 6 years ago
- finshingTool☆54Updated 8 years ago
- ☆31Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- ☆26Updated 5 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago