zeeev / vcflibLinks
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
☆20Updated 8 years ago
Alternatives and similar repositories for vcflib
Users that are interested in vcflib are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- genomic alignment similarity search tool☆18Updated 3 weeks ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Structural variant caller☆54Updated 3 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆30Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- ☆30Updated 5 years ago
- SV genotyping with long reads☆39Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆32Updated 4 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Population-wide Deletion Calling☆35Updated last month
- finshingTool☆55Updated 8 years ago