SeqOne / variant_alertLinks
Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two versions of ClinVar database.
☆14Updated 4 years ago
Alternatives and similar repositories for variant_alert
Users that are interested in variant_alert are comparing it to the libraries listed below
Sorting:
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Unfazed by genomic variant phasing☆27Updated last year
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- drunk on perbase pileups and lua expressions☆19Updated 3 weeks ago
- ☆13Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Structural variant pipeline☆17Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Updated 6 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Hidden Markov Model based Copy number caller☆20Updated this week
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- horizontal pileup☆16Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Variant call adjudication☆16Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- ☆18Updated 8 years ago