Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two versions of ClinVar database.
☆14Jul 19, 2021Updated 4 years ago
Alternatives and similar repositories for variant_alert
Users that are interested in variant_alert are comparing it to the libraries listed below
Sorting:
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Updated this week
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- ☆15Aug 14, 2020Updated 5 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 2 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 7 months ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Mar 1, 2012Updated 14 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 6 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- ☆16Aug 8, 2025Updated 6 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Feb 17, 2026Updated last week
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Oct 12, 2024Updated last year
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- fast easy interval overlapping for nim-lang☆29Jul 9, 2025Updated 7 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 8 months ago
- Interface to USDA Databases☆13Jan 28, 2021Updated 5 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 10 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated last month
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- vembrane filters VCF records using python expressions☆68Jan 8, 2026Updated last month
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- A standalone and free application to explore genetics variations from VCF file☆108Apr 27, 2024Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 8 years ago
- PGxPOP☆17Jan 25, 2023Updated 3 years ago