cancerit / cgpBigWig
BigWig manpulation tools using libBigWig and htslib
☆29Updated 8 months ago
Alternatives and similar repositories for cgpBigWig:
Users that are interested in cgpBigWig are comparing it to the libraries listed below
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- full taxonomer cython repository☆22Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 4 months ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆20Updated 3 weeks ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆24Updated 3 weeks ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- ☆37Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago