sjackman / fastascriptsLinks
Manipulate FASTA files
☆30Updated 11 years ago
Alternatives and similar repositories for fastascripts
Users that are interested in fastascripts are comparing it to the libraries listed below
Sorting:
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- finshingTool☆54Updated 9 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Synteny Imager☆65Updated 2 weeks ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- TGS scaffolding☆47Updated 4 years ago
- ☆45Updated 9 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- A reference-assisted assembly tool for producing draft chromosome sequences.☆42Updated last year
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- ☆68Updated 2 weeks ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- UCSC Nanopore☆44Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- ☆26Updated 6 years ago
- A program to call variants from genome alignment☆81Updated 8 months ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- ☆35Updated 5 years ago
- Genome Pair Rapid Dotter☆66Updated 4 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago