Manipulate FASTA files
☆29Aug 26, 2014Updated 11 years ago
Alternatives and similar repositories for fastascripts
Users that are interested in fastascripts are comparing it to the libraries listed below
Sorting:
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- ☆12Dec 12, 2014Updated 11 years ago
- ☆12Sep 11, 2025Updated 5 months ago
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 10 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 7 years ago
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 7 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated last year
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 8 years ago
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 9 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.☆16Apr 25, 2025Updated 10 months ago
- CoGe (Comparative Genomics) Platform☆46Dec 21, 2021Updated 4 years ago
- Whole genome visualization and comparative genomics in R☆21Feb 18, 2025Updated last year
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 8 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 6 years ago
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 9 years ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- A box of genomics tools☆21Aug 26, 2020Updated 5 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- ☆17Apr 1, 2018Updated 7 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Simple convertor from bam to FASTQ☆26Jun 30, 2015Updated 10 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- Pore-C support☆54Feb 22, 2023Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆32Mar 19, 2021Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Mar 29, 2023Updated 2 years ago
- Plant small RNA target prediction tool☆27Dec 19, 2016Updated 9 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Sep 24, 2015Updated 10 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago