Alternatives and similar repositories for Blast2Bam:

Users that are interested in Blast2Bam are comparing it to the libraries listed below

• mw55309 / Kraken_db_install_scripts
  Updated Kraken DB install scripts to cope with new-ish NCBI structure
  ☆46Updated 7 years ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆70Updated 4 months ago
• kjenike / panagram
  ☆61Updated this week
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 2 years ago
• MeHelmy / princess
  ☆79Updated 9 months ago
• arq5x / nanopore-scripts
  Various scripts and recipes for working with nanopore data
  ☆34Updated 8 years ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 5 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 months ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆92Updated 8 years ago
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆85Updated 2 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated 2 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆88Updated 3 years ago
• NBISweden / EMBLmyGFF3
  An efficient way to convert gff3 annotation files into EMBL format ready to submit.
  ☆59Updated 11 months ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• epi2me-labs / wf-basecalling
  ☆35Updated 3 weeks ago
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆60Updated 5 years ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• tseemann / samclip
  Filter SAM file for soft and hard clipped alignments
  ☆47Updated 8 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆86Updated 10 months ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆65Updated 6 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 4 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆43Updated 3 weeks ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• rhysf / Synima
  Synteny Imager
  ☆60Updated 5 months ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• epi2me-labs / wf-alignment
  ☆27Updated last week
• Shamir-Lab / Recycler
  This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…
  ☆58Updated 3 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago