guyduche / Blast2BamLinks
Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
☆48Updated 4 years ago
Alternatives and similar repositories for Blast2Bam
Users that are interested in Blast2Bam are comparing it to the libraries listed below
Sorting:
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- UCSC Nanopore☆43Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 8 months ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- ☆49Updated 2 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated this week
- Filter SAM file for soft and hard clipped alignments☆51Updated last year
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago