Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
☆49May 25, 2021Updated 4 years ago
Alternatives and similar repositories for Blast2Bam
Users that are interested in Blast2Bam are comparing it to the libraries listed below
Sorting:
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Nov 26, 2024Updated last year
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Feb 14, 2026Updated 2 weeks ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆74May 31, 2016Updated 9 years ago
- Global alignment and alignment extension☆142Jun 27, 2023Updated 2 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- ☆12Sep 11, 2025Updated 5 months ago
- Dugong - Scientific Linux Container☆18Jul 25, 2018Updated 7 years ago
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- ☆28Dec 1, 2022Updated 3 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49May 7, 2019Updated 6 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 2 weeks ago
- Tools for early stage alignment file processing☆95Mar 12, 2019Updated 6 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 3 months ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- ☆13Jan 20, 2016Updated 10 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago
- The Modular Aligner and The Modular SV Caller☆46Jul 18, 2023Updated 2 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 5 months ago
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 11 years ago
- ☆15Apr 6, 2016Updated 9 years ago
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Jul 28, 2019Updated 6 years ago