guyduche / Blast2Bam
Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
☆46Updated 3 years ago
Alternatives and similar repositories for Blast2Bam:
Users that are interested in Blast2Bam are comparing it to the libraries listed below
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 7 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Visualize whole genome alignments as linear maps☆71Updated 6 months ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆58Updated last year
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆59Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆78Updated 4 months ago
- UCSC Nanopore☆43Updated 5 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- ☆31Updated 10 months ago
- ☆61Updated last week
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆86Updated 4 months ago
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- Simple pileup-based variant caller☆88Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago