guyduche / Blast2BamLinks
Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
☆47Updated 4 years ago
Alternatives and similar repositories for Blast2Bam
Users that are interested in Blast2Bam are comparing it to the libraries listed below
Sorting:
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆52Updated 4 years ago
- Visualize whole genome alignments as linear maps☆72Updated 8 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆59Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated last year
- ☆82Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated 10 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 6 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 6 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆58Updated last week
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 8 years ago
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago