guyduche / Blast2BamLinks
Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
☆48Updated 4 years ago
Alternatives and similar repositories for Blast2Bam
Users that are interested in Blast2Bam are comparing it to the libraries listed below
Sorting:
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- ☆31Updated last year
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year