lh3 / htsboxLinks
My experimental tools on top of htslib. NOT OFFICIAL!!!
☆56Updated this week
Alternatives and similar repositories for htsbox
Users that are interested in htsbox are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- UCSC Nanopore☆43Updated 6 years ago
- Structural variant caller☆55Updated 3 years ago
- ☆81Updated 6 months ago
- SV genotyping with long reads☆39Updated 2 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 10 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Linked-Read Alignment Tool☆26Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Structural Variant Index☆75Updated 9 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- Long-read splice alignment with high accuracy☆63Updated 11 months ago