lh3 / htsbox
My experimental tools on top of htslib. NOT OFFICIAL!!!
☆54Updated last year
Alternatives and similar repositories for htsbox:
Users that are interested in htsbox are comparing it to the libraries listed below
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆21Updated 5 years ago
- SV genotyping with long reads☆40Updated last year
- Structural variant caller☆54Updated 3 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- ☆35Updated 5 years ago
- ☆48Updated 7 months ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- ☆79Updated 9 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago
- ☆30Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 4 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- ☆33Updated 10 months ago
- Improved Phased Assembler☆28Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago