lh3 / htsboxLinks
My experimental tools on top of htslib. NOT OFFICIAL!!!
☆59Updated 5 months ago
Alternatives and similar repositories for htsbox
Users that are interested in htsbox are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- ☆84Updated 11 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Updated 7 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 5 years ago
- ☆21Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Tools for finding mobile element insertions from single-end datasets☆24Updated 6 years ago
- Structural Variant Index☆75Updated last year
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- ☆51Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Linked-Read Alignment Tool☆26Updated 6 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago