kingsfordgroup / sailfishLinks
Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
☆127Updated 3 years ago
Alternatives and similar repositories for sailfish
Users that are interested in sailfish are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- ☆83Updated 3 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Fast fusion detection using kallisto☆79Updated 6 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- ☆69Updated 3 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Updated 6 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆96Updated 4 years ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- Collection of CGAT NGS Pipelines☆43Updated 7 years ago
- ☆96Updated 3 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Analysis pipeline for cancer sequencing data☆112Updated 8 months ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- Galaxy RNA workbench☆41Updated 5 years ago