lweasel / piquantLinks
A pipeline to assess the quantification of transcripts.
☆19Updated 3 years ago
Alternatives and similar repositories for piquant
Users that are interested in piquant are comparing it to the libraries listed below
Sorting:
- ☆12Updated 10 years ago
- reference free variant assembly☆34Updated 2 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 9 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Updated last year
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 2 months ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 4 years ago
- collection of data structures and algorithms☆19Updated 6 years ago
- Pipeline for poreathon☆14Updated 11 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.☆21Updated 11 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- High-level API for storing and querying sequence variant data☆20Updated 6 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- ☆36Updated 5 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Stupid Simple Elastic Compute Cloud☆16Updated 2 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Fast and accurate sequence demultiplexing☆28Updated 7 months ago
- a string to graph aligner☆41Updated 9 years ago
- Demonstrating the PRoot program☆11Updated 9 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Updated 10 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Estimate linkage disequilibrium between unphased loci☆11Updated 10 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Compare assembly graph file formats☆16Updated 10 years ago