lweasel / piquant
A pipeline to assess the quantification of transcripts.
☆19Updated 2 years ago
Alternatives and similar repositories for piquant:
Users that are interested in piquant are comparing it to the libraries listed below
- RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.☆21Updated 10 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Updated 3 months ago
- a string to graph aligner☆41Updated 8 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 8 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- reference free variant assembly☆33Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- ☆26Updated 2 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- ☆37Updated 4 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆32Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- ☆18Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago