Adamtaranto / blast-bestiesLinks
Rapid discovery of reciprocal best blast pairs.
☆10Updated last year
Alternatives and similar repositories for blast-besties
Users that are interested in blast-besties are comparing it to the libraries listed below
Sorting:
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- transposable element typing pipeline☆19Updated last year
- Sketch phylogenetic trees and networks☆23Updated last week
- A comparative genome scaffolding tool☆16Updated 7 years ago
- ☆28Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Differential k-mer analysis☆38Updated last year
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Variant call verification☆16Updated 6 months ago
- Genome size estimation from long read overlaps☆74Updated last week
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- The MafFilter genome alignment processor☆19Updated 6 months ago
- Better Alignments with Translated HMMER☆23Updated 2 weeks ago
- FastK based version of Merqury☆28Updated 2 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- Quickly get coverage statistics given reads and an assembly☆16Updated last year
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated this week
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago