Adamtaranto / blast-besties
Rapid discovery of reciprocal best blast pairs.
☆10Updated 2 months ago
Alternatives and similar repositories for blast-besties:
Users that are interested in blast-besties are comparing it to the libraries listed below
- transposable element typing pipeline☆17Updated 10 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆35Updated 3 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- ☆15Updated 4 years ago
- software to identify primers that can distinguish genomes☆21Updated last week
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 9 months ago
- ☆19Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Variant call verification☆15Updated 2 weeks ago
- Strain-level taxonomic classification of metagenomic data using pangenome graphs☆22Updated 2 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 5 months ago
- ☆16Updated this week
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- k-mers and the like☆20Updated this week
- ☆15Updated 7 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Genome size estimation from long read overlaps☆47Updated last month
- De novo VIral Genome Annotator☆21Updated 4 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆16Updated 7 months ago
- Read contamination removal☆24Updated last year
- Better Alignments with Translated HMMER☆17Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆27Updated last month