Adamtaranto / blast-besties
Rapid discovery of reciprocal best blast pairs.
☆10Updated 6 months ago
Alternatives and similar repositories for blast-besties
Users that are interested in blast-besties are comparing it to the libraries listed below
Sorting:
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Variant call verification☆16Updated 4 months ago
- transposable element typing pipeline☆18Updated last year
- A comparative genome scaffolding tool☆17Updated 6 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆20Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆15Updated 7 years ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last month
- ☆17Updated this week
- Genome size estimation from long read overlaps☆55Updated last month
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Visualize microbial evolution at the SNP level!☆14Updated 5 months ago
- ☆15Updated 4 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- Basecalling configuration prediction through FASTQ files☆17Updated last week
- Prefix-renaming FASTA records really fast.☆17Updated 10 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 3 months ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- Better Alignments with Translated HMMER☆19Updated this week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated this week
- metagenome population recombination rate estimation pipeline☆12Updated this week