brentp / hts-pythonLinks
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
☆49Updated 8 years ago
Alternatives and similar repositories for hts-python
Users that are interested in hts-python are comparing it to the libraries listed below
Sorting:
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆36Updated 5 years ago
- a string to graph aligner☆41Updated 9 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 3 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 10 months ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- pythonic wrapper for htslib☆24Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Analysis toolkit and programming library for k-mer profiles☆31Updated 4 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- a pileup library that embraces the huge☆43Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- sort genomic data☆36Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago