brentp / hts-pythonLinks
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
☆49Updated 8 years ago
Alternatives and similar repositories for hts-python
Users that are interested in hts-python are comparing it to the libraries listed below
Sorting:
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆37Updated 4 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆32Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Lacer: Accurate Base Quality Score Recalibration using Linear Algebra☆8Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆21Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- a string to graph aligner☆41Updated 8 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A Python library for reading and writing PacBio® data files☆39Updated 3 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- pythonic wrapper for htslib☆24Updated 7 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago