kdm9 / axeLinks
Rapid competitive read demulitplexer. Made with tries.
☆23Updated 2 weeks ago
Alternatives and similar repositories for axe
Users that are interested in axe are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆29Updated 2 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- ☆28Updated last month
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 5 years ago
- ☆19Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆15Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- ☆16Updated 7 years ago
- blast, shmlast☆22Updated 4 years ago
- ☆32Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year