kdm9 / axeLinks
Rapid competitive read demulitplexer. Made with tries.
☆23Updated 7 months ago
Alternatives and similar repositories for axe
Users that are interested in axe are comparing it to the libraries listed below
Sorting:
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- reference free variant assembly☆34Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- ☆24Updated 7 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- my PhD thesis☆36Updated 6 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Python bindings to minimap2☆16Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago