Rapid competitive read demulitplexer. Made with tries.
☆23May 19, 2025Updated last year
Alternatives and similar repositories for axe
Users that are interested in axe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Aug 1, 2026Updated last week
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated 2 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 11 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 10 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 6 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated last month
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- collection of small scripts or how-tos that don't fall under a separate project☆21Oct 18, 2017Updated 8 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 3 months ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago
- python stuff I use☆20Feb 16, 2026Updated 5 months ago
- A C library for handling bigWig files☆83Jan 17, 2025Updated last year
- Tutorial on programming or "big data"/bioinformatics☆32Jan 5, 2018Updated 8 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- High-performance error correction for Illumina resequencing data☆75May 31, 2016Updated 10 years ago
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 7 years ago
- Genetic coordinates so simple, it feels like MAGIC!☆10Jan 29, 2026Updated 6 months ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 11 months ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Oct 15, 2024Updated last year
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆21Apr 2, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Quick Read Quality Control☆20Feb 28, 2023Updated 3 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 11 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago