kdm9 / axeLinks
Rapid competitive read demulitplexer. Made with tries.
☆23Updated 8 months ago
Alternatives and similar repositories for axe
Users that are interested in axe are comparing it to the libraries listed below
Sorting:
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- reference free variant assembly☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Updated 7 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Reference-free variant discovery in large eukaryotic genomes☆42Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 10 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 7 months ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- ☆15Updated 7 years ago
- ☆24Updated 8 months ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- ☆18Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago