Alternatives and similar repositories for tronko

Users that are interested in tronko are comparing it to the libraries listed below

• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated 10 months ago
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆23Updated 6 years ago
• pmenzel / taxonomy-tools
  C++ tools for NCBI taxonomy tasks
  ☆11Updated 3 weeks ago
• statdivlab / groves
  Tools for analyzing trees
  ☆14Updated 3 months ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• duchene / phylomad
  ☆19Updated last year
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 5 months ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆19Updated 5 months ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 4 years ago
• pg-space / panspace
  Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes
  ☆11Updated this week
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated last year
• lorenzgerber / krakenSankey
  a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser
  ☆13Updated 6 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated last week
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• tseemann / mokka
  Annotate your metagenome assemblies
  ☆11Updated 6 years ago
• robertaboukhalil / alignment-sandbox
  Tool for exploring sequence alignment algorithms
  ☆13Updated 10 months ago
• TGenNorth / NASP
  Northern Arizona SNP Pipeline
  ☆19Updated 8 months ago
• emvolz-phylodynamics / treestructure
  ☆17Updated 3 weeks ago
• thh32 / Protologger
  Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
  ☆14Updated last year
• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆16Updated 3 weeks ago
• phac-nml / neptune
  Neptune: Genomic Signature Discovery
  ☆20Updated 7 months ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆40Updated 9 months ago
• moritzbuck / mOTUlizer
  Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
  ☆15Updated 9 months ago
• taxburst / taxburst
  sunburst plots for taxonomy
  ☆21Updated this week
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 6 months ago
• aweimann / traitar
  ☆22Updated 2 years ago