lpipes / tronkoLinks
A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets
☆25Updated 7 months ago
Alternatives and similar repositories for tronko
Users that are interested in tronko are comparing it to the libraries listed below
Sorting:
- C++ tools for NCBI taxonomy tasks☆11Updated 4 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Tools for analyzing trees☆13Updated 7 months ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 7 years ago
- R package for microbial pangenomics☆24Updated 3 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- De novo VIral Genome Annotator☆23Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated this week
- Neptune: Genomic Signature Discovery☆20Updated 11 months ago
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- ☆19Updated last year
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆10Updated 3 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- ☆28Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated 3 weeks ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆13Updated last week
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Updated 2 months ago
- Working with the outputs of sourmash in R☆27Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 9 months ago
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- ☆18Updated last month