Alternatives and similar repositories for meteor

Users that are interested in meteor are comparing it to the libraries listed below

• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 3 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆26Updated last year
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 9 months ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆26Updated this week
• EBI-Metagenomics / kegg-pathways-completeness-tool
  This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)
  ☆30Updated 3 weeks ago
• bluenote-1577 / fairy
  alignment-free coverage calculation for metagenomic binning >100 times faster
  ☆48Updated 11 months ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆46Updated 3 weeks ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆33Updated last year
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆26Updated 2 months ago
• valflanza / accnet
  ☆13Updated 8 years ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆29Updated 11 months ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• cruizperez / FastAAI
  ☆25Updated last year
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆42Updated last year
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆43Updated 2 years ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆46Updated 10 months ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆71Updated last month
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆29Updated 9 months ago
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆25Updated last week
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆20Updated 6 months ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆24Updated 3 years ago
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆23Updated 2 years ago
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆34Updated 6 months ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆58Updated this week
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆14Updated last year
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆50Updated 3 years ago
• gtonkinhill / tracs
  Fast pairwise transmission inference from single genome and/or metagenomic data
  ☆23Updated 6 months ago
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆41Updated last year