metagenopolis / meteor
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
☆12Updated last week
Related projects ⓘ
Alternatives and complementary repositories for meteor
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆12Updated this week
- A microbiome analysis toolkit for R☆20Updated last year
- ☆50Updated 2 weeks ago
- Working with the outputs of sourmash in R☆25Updated last year
- ☆17Updated last year
- Plot microbiome time series in parallel☆24Updated last year
- ☆45Updated 7 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- BEAV: Bacterial Element Annotation reVamped☆58Updated last week
- microbiome data simulation package☆18Updated 3 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆11Updated 3 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 11 months ago
- R package for microbial pangenomics☆21Updated 2 years ago
- ☆56Updated last month
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆46Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆48Updated 6 months ago
- ☆28Updated last year
- Pipelines used in the lab.☆10Updated 3 weeks ago
- GraftM - Rapid community profiles from metagenomes☆44Updated 3 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆18Updated 2 months ago
- ☆15Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 3 months ago
- Speedy versions of phyloseq functions☆46Updated 6 months ago
- ☆26Updated 7 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆26Updated 3 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆37Updated 2 months ago