TransAnnot - a fast transcriptome annotation pipeline
☆20Jan 22, 2025Updated last year
Alternatives and similar repositories for transannot
Users that are interested in transannot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated last month
- ☆27Jun 20, 2023Updated 3 years ago
- TD2☆43May 17, 2026Updated 4 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 8 months ago
- ☆16Apr 25, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A workflow and scripts for large-scale antiSMASH analyses☆53Apr 3, 2025Updated last year
- Create equal-area histograms with 'ggplot2'☆10Jul 23, 2023Updated 3 years ago
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆28Updated this week
- ☆22Apr 20, 2026Updated 5 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Updated this week
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 5 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Jan 22, 2025Updated last year
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆40Oct 1, 2026Updated last week
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated 2 years ago
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆64Oct 2, 2026Updated last week
- sensitive and precise assembly of short sequencing reads☆171Oct 11, 2024Updated last year
- ☆52May 29, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆22Updated this week
- tree-aggregated compositional analysis for high-throughput sequencing data☆12Aug 24, 2022Updated 4 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- A comprehensive prokaryotic genome annotation pipeline☆92Sep 4, 2026Updated last month
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 11 months ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 11 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆102Sep 24, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆32Jul 21, 2026Updated 2 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆33Nov 2, 2025Updated 11 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Updated this week
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated 2 years ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Updated this week
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated 2 years ago