soedinglab / transannotLinks
TransAnnot - a fast transcriptome annotation pipeline
☆18Updated 7 months ago
Alternatives and similar repositories for transannot
Users that are interested in transannot are comparing it to the libraries listed below
Sorting:
- ☆42Updated last year
- ☆26Updated 7 months ago
- Bacterial GWAS analysis☆43Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆47Updated 5 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆67Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated last month
- UFCG: Universal Fungal Core Genes☆34Updated last month
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated last month
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 9 months ago
- strain-level analysis tools☆39Updated 10 months ago
- Discover and annotate the virome☆46Updated last month
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 9 months ago