soedinglab / transannotLinks
TransAnnot - a fast transcriptome annotation pipeline
☆20Updated 11 months ago
Alternatives and similar repositories for transannot
Users that are interested in transannot are comparing it to the libraries listed below
Sorting:
- ☆43Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- ☆29Updated this week
- MAG Circularization Method☆32Updated 2 months ago
- Bacterial GWAS analysis☆46Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- Gene-flank analysis tool☆34Updated last year
- Discover and annotate the virome☆58Updated 3 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆33Updated 5 months ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 4 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- Automatic Assembly For The Fungi☆25Updated 4 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆14Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year