TransAnnot - a fast transcriptome annotation pipeline
☆20Jan 22, 2025Updated last year
Alternatives and similar repositories for transannot
Users that are interested in transannot are comparing it to the libraries listed below
Sorting:
- ☆26Jun 20, 2023Updated 2 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆27Feb 8, 2026Updated 2 weeks ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Apr 3, 2025Updated 10 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Jan 15, 2026Updated last month
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆32Jan 19, 2026Updated last month
- ☆21Jul 8, 2025Updated 7 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 6 months ago
- TD2☆32Jan 14, 2026Updated last month
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year
- ☆49Mar 13, 2024Updated last year
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 17, 2026Updated last week
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- Create equal-area histograms with 'ggplot2'☆10Jul 23, 2023Updated 2 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 5 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Apr 10, 2025Updated 10 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 4 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆122Updated this week
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- ☆82Nov 27, 2025Updated 3 months ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 9 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆90Feb 11, 2026Updated 2 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- sensitive and precise assembly of short sequencing reads☆162Oct 11, 2024Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Feb 5, 2026Updated 3 weeks ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- MAG Circularization Method☆32Nov 4, 2025Updated 3 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- ☆16Apr 25, 2019Updated 6 years ago
- KEGG Module Evaluation Tool☆32Nov 15, 2023Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Produce scientific figures in R that look exactly how you want☆18Jan 17, 2026Updated last month
- The binning tool with dynamic contrastive learning and deep language model☆21Nov 14, 2025Updated 3 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Feb 17, 2026Updated last week
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆46Jan 26, 2026Updated last month
- Discovery of conserved gene clusters in multiple genomes☆124Jan 16, 2026Updated last month
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 4 months ago