TransAnnot - a fast transcriptome annotation pipeline
☆20Jan 22, 2025Updated last year
Alternatives and similar repositories for transannot
Users that are interested in transannot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆28Apr 14, 2026Updated 2 weeks ago
- TD2☆38Jan 14, 2026Updated 3 months ago
- TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments☆34Apr 22, 2026Updated last week
- ☆25Jun 20, 2023Updated 2 years ago
- ☆16Apr 25, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 3 months ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆37Apr 7, 2026Updated 3 weeks ago
- A workflow and scripts for large-scale antiSMASH analyses☆48Apr 3, 2025Updated last year
- Create equal-area histograms with 'ggplot2'☆10Jul 23, 2023Updated 2 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 7 months ago
- ☆22Apr 20, 2026Updated last week
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆96Updated this week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Jan 22, 2025Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Apr 13, 2026Updated 2 weeks ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 8 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 6 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆145Apr 5, 2026Updated 3 weeks ago
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year
- sensitive and precise assembly of short sequencing reads☆166Oct 11, 2024Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated last month
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆83Apr 10, 2026Updated 2 weeks ago
- The binning tool with dynamic contrastive learning and deep language model☆23Nov 14, 2025Updated 5 months ago
- ☆49Mar 13, 2024Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 11 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 2 months ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 5 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆18Feb 17, 2026Updated 2 months ago
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 6 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆55Sep 7, 2025Updated 7 months ago