soedinglab / transannot
TransAnnot - a fast transcriptome annotation pipeline
☆15Updated 3 months ago
Alternatives and similar repositories for transannot:
Users that are interested in transannot are comparing it to the libraries listed below
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 10 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆41Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Genome size estimation from long read overlaps☆52Updated last week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last week
- Microbial agile accurate SNP Typer☆29Updated last year
- Bacterial GWAS analysis☆40Updated this week
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- ☆43Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated last month
- Calculate assocations between genes and traits☆23Updated last month
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated 11 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 2 months ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- Remove human reads from a sequencing run☆40Updated 6 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆34Updated last month
- Gene-flank analysis tool☆27Updated 4 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago