Alternatives and similar repositories for CroCoDeEL:

Users that are interested in CroCoDeEL are comparing it to the libraries listed below

• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆23Updated last month
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated last week
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆52Updated 5 years ago
• metagenopolis / meteor
  Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…
  ☆20Updated last week
• wandreopoulos / deeplasmid
  ☆20Updated 8 months ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆42Updated 3 weeks ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆49Updated 10 months ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆20Updated last year
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated last year
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆34Updated 3 years ago
• allind / EukDetect
  ☆50Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆27Updated 6 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated last week
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆21Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆40Updated 2 weeks ago
• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆37Updated 3 months ago
• leylabmpi / Struo
  Ley Lab MetaGenome Profiler DataBase generator
  ☆49Updated 2 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆40Updated 6 months ago
• patrickwest / EukRep_Pipeline
  ☆24Updated 6 years ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 11 months ago
• a-h-b / binny
  ☆28Updated last year
• Serka-M / mmlong2
  Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
  ☆46Updated last month
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated 2 years ago
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆24Updated 2 years ago
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆26Updated last month
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆44Updated 2 weeks ago
• boulund / phaster_scripts
  Small utility script to submit genomes to PHASTER for phage detection
  ☆24Updated 3 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆48Updated 2 years ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated last year