metagenopolis / CroCoDeELLinks
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
☆24Updated 2 weeks ago
Alternatives and similar repositories for CroCoDeEL
Users that are interested in CroCoDeEL are comparing it to the libraries listed below
Sorting:
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆22Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Discover and annotate the virome☆42Updated last month
- ☆20Updated 9 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Bacterial GWAS analysis☆40Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated last month
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 7 months ago
- ☆25Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- ☆50Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Extract metadata from biosamples in NCBI☆14Updated 4 years ago
- ☆24Updated 6 years ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- Prophage Activity Estimator☆26Updated last year
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated 2 months ago