metagenopolis / CroCoDeELLinks
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
☆24Updated 4 months ago
Alternatives and similar repositories for CroCoDeEL
Users that are interested in CroCoDeEL are comparing it to the libraries listed below
Sorting:
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated this week
- ☆33Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 4 months ago
- Discover and annotate the virome☆56Updated 2 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 3 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆68Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- MAG Circularization Method☆32Updated last month
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- ☆56Updated 5 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- ☆26Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Updated last week
- Automatic eukaryotic taxonomic classification☆29Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- ☆20Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- ☆28Updated last week
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 3 weeks ago