Alternatives and similar repositories for CroCoDeEL:

Users that are interested in CroCoDeEL are comparing it to the libraries listed below

• metagenopolis / meteor
  Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…
  ☆18Updated this week
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated 3 weeks ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆22Updated 6 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆53Updated last week
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆23Updated last year
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆32Updated 3 years ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆20Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆51Updated 4 years ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆36Updated 4 months ago
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…
  ☆43Updated this week
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆36Updated 2 months ago
• a-h-b / binny
  ☆28Updated last year
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆22Updated 3 months ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆18Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆26Updated 3 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆27Updated 7 months ago
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated 10 months ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆60Updated 3 months ago
• lauriebelch / SOCfinder
  ☆16Updated 2 months ago
• wandreopoulos / deeplasmid
  ☆19Updated 5 months ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated last year
• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• ZhaoXM-Lab / metaMIC
  Assessing and Improving the quality of metagenomic assemblies
  ☆28Updated 3 years ago
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆23Updated 3 weeks ago
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆31Updated last year
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆41Updated 3 weeks ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆28Updated last year
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆16Updated 3 months ago
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆26Updated last year