genotoul-bioinfo / BinetteLinks
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
☆35Updated last week
Alternatives and similar repositories for Binette
Users that are interested in Binette are comparing it to the libraries listed below
Sorting:
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆14Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- ☆20Updated 9 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Recombination-free trees☆58Updated 3 months ago
- IslandPath standalone software☆32Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- ☆25Updated 6 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- ☆26Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week
- Tools to analyze the differences and similarities between CRISPR arrays☆10Updated 6 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.