A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
☆56Sep 28, 2026Updated last week
Alternatives and similar repositories for Binette
Users that are interested in Binette are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated last month
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 4 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Updated this week
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆42Sep 16, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic data☆32Sep 8, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated last month
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆64Oct 2, 2026Updated last week
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 1, 2026Updated last week
- Metagenomic Binning Algorithm☆55Oct 2, 2026Updated last week
- Fast DNA search and [host] depletion using minimizers☆127Oct 2, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- An algorithm for clustering metagenomic sequences.☆43Aug 5, 2026Updated 2 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆173Oct 1, 2026Updated last week
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆15Nov 20, 2025Updated 10 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆186Sep 9, 2026Updated last month
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆106Jul 14, 2026Updated 2 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Sep 8, 2026Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆234May 9, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆23Sep 19, 2025Updated last year
- Build a partitioned pangenome graph from microbial genomes☆312Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- Graph-based assembly phasing☆102Nov 25, 2025Updated 10 months ago
- ☆23Jan 6, 2026Updated 9 months ago
- ☆27Jun 20, 2023Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Sep 1, 2026Updated last month
- MAGScoT - a MAG scoring and refinement tool☆50Apr 8, 2026Updated 6 months ago
- Read alignment statistics for metagenomics☆406Sep 23, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A toolkit for prokaryotic comparative genomics☆53Feb 23, 2026Updated 7 months ago
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆54Jun 10, 2026Updated 4 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 3 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆95Aug 13, 2024Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆39Aug 21, 2026Updated last month