genotoul-bioinfo / BinetteLinks
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
☆40Updated 2 weeks ago
Alternatives and similar repositories for Binette
Users that are interested in Binette are comparing it to the libraries listed below
Sorting:
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆15Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- ☆24Updated 6 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated last week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆54Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆76Updated last year
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Bacterial GWAS analysis☆45Updated last week
- ☆26Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆48Updated last month
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated last week
- Order and orientation of complete bacterial genomes☆29Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆78Updated last month
- ☆20Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆38Updated 3 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
- tiara – a tool for DNA sequence classification☆69Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago