NBChub / bgcflow
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
☆35Updated last month
Related projects ⓘ
Alternatives and complementary repositories for bgcflow
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- ☆35Updated 2 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆60Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆30Updated 8 months ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- Automatic eukaryotic taxonomic classification☆28Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- ☆43Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆80Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆36Updated 3 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆37Updated 7 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆16Updated 2 weeks ago
- A package to annotate protein sequences☆53Updated 4 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆38Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- Unified Human Gut Virome Catalog☆27Updated 4 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆20Updated 2 years ago
- UFCG: Universal Fungal Core Genes☆32Updated last month
- Scalable creating/updating of metagenome profiling databases☆58Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 4 years ago
- Linking MAGs with 16S rRNA marker genes☆24Updated 2 years ago
- CLI tool to annotate genes with KOfam☆72Updated last year
- metabolic heatmap☆18Updated 5 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆21Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆11Updated 2 years ago