Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
☆52May 16, 2026Updated this week
Alternatives and similar repositories for bgcflow
Users that are interested in bgcflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 6 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆100Aug 11, 2025Updated 9 months ago
- Similarity networks of biosynthetic gene clusters☆168Apr 1, 2026Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆49Apr 3, 2025Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bioinformatic Tools for study Evolution of metabolic diversity☆41Feb 27, 2024Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated 2 months ago
- ☆87Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 7 months ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- ☆10Mar 29, 2025Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆106Jun 25, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- antiSMASH☆255Mar 24, 2026Updated last month
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆13Jul 28, 2025Updated 9 months ago
- ☆21Apr 20, 2026Updated last month
- BGC Detection and Classification Using Deep Learning☆158Nov 11, 2023Updated 2 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Nov 9, 2022Updated 3 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆37Apr 7, 2026Updated last month
- (Meta-)genome screening for functional and natural product gene sequences☆109Apr 30, 2026Updated 3 weeks ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated last week
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆12Jan 23, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Jun 20, 2023Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 2 weeks ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24May 7, 2026Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated 2 months ago
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 4 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63May 5, 2026Updated 2 weeks ago
- ☆17May 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Apr 29, 2026Updated 3 weeks ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 4 months ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated 2 months ago
- Repo for Proksee Cmd Line Tools☆29Feb 22, 2023Updated 3 years ago
- Reaction Analysis through Imaging of Chemical Units☆16Dec 5, 2025Updated 5 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 5 months ago