UeenHuynh / MGMA_2024View external linksLinks
☆32Nov 13, 2024Updated last year
Alternatives and similar repositories for MGMA_2024
Users that are interested in MGMA_2024 are comparing it to the libraries listed below
Sorting:
- ☆35Aug 7, 2025Updated 6 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- The binning tool with dynamic contrastive learning and deep language model☆21Nov 14, 2025Updated 3 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆35Dec 19, 2025Updated last month
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Feb 9, 2026Updated last week
- Shiny app to easily create publishable plots for scientific papers☆39Aug 9, 2025Updated 6 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Jul 21, 2025Updated 6 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Jan 7, 2026Updated last month
- A comprehensive pipeline for Ribo-seq data analysis☆11Jun 27, 2025Updated 7 months ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆16Mar 3, 2025Updated 11 months ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 2 months ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- Protein Purification☆11Dec 7, 2016Updated 9 years ago
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆47Jun 4, 2025Updated 8 months ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- ☆13Dec 3, 2024Updated last year
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jan 28, 2026Updated 2 weeks ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- FOR my learing☆12Feb 4, 2026Updated last week
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆46Jan 27, 2026Updated 3 weeks ago
- Sichuan Agricultural University Plant Diseases and Pests Open Dataset☆10May 6, 2020Updated 5 years ago
- MR project investigating the mediating role of mammographic density in the childhood body size and breast cancer relationship☆11May 14, 2024Updated last year
- Genome annotation pre-publication results☆25Dec 22, 2025Updated last month
- ☆10Jun 9, 2025Updated 8 months ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Oct 29, 2021Updated 4 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- ☆15Dec 11, 2022Updated 3 years ago
- Integrating Ribo-SEQ Upstream and Downstream Analysis☆11Oct 14, 2024Updated last year
- ☆16Oct 3, 2025Updated 4 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- API for the IGS data portal☆11May 6, 2021Updated 4 years ago
- Sonar simulator considering reverberation, noise, etc☆11Aug 7, 2020Updated 5 years ago
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆17Jun 19, 2025Updated 7 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- ☆11Mar 10, 2024Updated last year
- K-mer substring space decomposition☆44Sep 1, 2025Updated 5 months ago