☆23Jun 5, 2021Updated 4 years ago
Alternatives and similar repositories for GeneTEFlow
Users that are interested in GeneTEFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 2 years ago
- Distribution of TEs and their relationship to genes in host genome☆24Jun 20, 2023Updated 2 years ago
- sort genomic data☆36Nov 7, 2025Updated 4 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Jul 1, 2020Updated 5 years ago
- ☆27Feb 19, 2025Updated last year
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Jun 16, 2022Updated 3 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆22Aug 24, 2023Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 24, 2025Updated 8 months ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- ☆17Feb 16, 2024Updated 2 years ago
- ☆10Jan 29, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 4 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆275Nov 6, 2025Updated 4 months ago
- Mobile Genetic Elements Retrieving Tool☆16Feb 11, 2026Updated last month
- R package for large-scale CNV analysis from RNA-seq☆19Dec 21, 2023Updated 2 years ago
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆199Mar 12, 2026Updated 2 weeks ago
- ☆15Jul 8, 2022Updated 3 years ago
- Analysis of transposable elements☆13Dec 4, 2025Updated 3 months ago
- ☆18Jun 21, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 9 months ago
- Plot multiple sequence alignment (MSA)☆16Sep 23, 2024Updated last year
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 3 weeks ago
- RNA-Seq analysis workflow☆105Jul 14, 2021Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago