☆23Jun 5, 2021Updated 4 years ago
Alternatives and similar repositories for GeneTEFlow
Users that are interested in GeneTEFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 2 years ago
- Distribution of TEs and their relationship to genes in host genome☆24Jun 20, 2023Updated 2 years ago
- sort genomic data☆36Nov 7, 2025Updated 5 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆11May 12, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Jul 1, 2020Updated 5 years ago
- ☆28Feb 19, 2025Updated last year
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Jun 16, 2022Updated 3 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆22Aug 24, 2023Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆25Mar 31, 2026Updated last month
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- ☆17Feb 16, 2024Updated 2 years ago
- ☆10Jan 29, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- Mobile Genetic Elements Retrieving Tool☆16Feb 11, 2026Updated 2 months ago
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 7 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆279Nov 6, 2025Updated 6 months ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- R package for large-scale CNV analysis from RNA-seq☆20Dec 21, 2023Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆206Apr 20, 2026Updated 2 weeks ago
- ☆15Jul 8, 2022Updated 3 years ago
- Analysis of transposable elements☆13Apr 27, 2026Updated last week
- ☆17Jun 21, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 10 months ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 2 weeks ago
- A python package for chromVAR☆33May 1, 2023Updated 3 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 2 months ago
- RNA-Seq analysis workflow☆105Jul 14, 2021Updated 4 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated last year