zhongw2 / GeneTEFlow

Related projects ⓘ

Alternatives and complementary repositories for GeneTEFlow

• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆20Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 2 weeks ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆15Updated 4 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆12Updated 5 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆36Updated 2 years ago
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆20Updated 2 years ago
• LappalainenLab / lorals
  ☆33Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆23Updated 2 years ago
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆19Updated 4 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 weeks ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆17Updated 7 months ago
• mortazavilab / cerberus
  ☆16Updated 3 months ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆14Updated last month
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆18Updated last year
• XiDsLab / TAGET
  ☆15Updated 2 years ago
• djhn75 / RNAEditor
  ☆14Updated 2 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆38Updated last year
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆13Updated last year
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆16Updated 4 years ago
• Aufiero / circRNAprofiler
  ☆10Updated 3 weeks ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated 7 months ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated last year
• LappalainenLab / lorals_paper_code
  ☆24Updated 2 years ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆13Updated 4 months ago
• dixonlab / hic_breakfinder
  ☆35Updated 5 years ago
• YangLab / RADAR
  RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
  ☆18Updated last year