Alternatives and similar repositories for EvoEco-ECR-brainstorming

Users that are interested in EvoEco-ECR-brainstorming are comparing it to the libraries listed below

• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆47Updated 2 months ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆27Updated 2 weeks ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated last month
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆21Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 3 years ago
• BGAcademy23 / smudgeplot
  Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
  ☆11Updated 2 years ago
• harvardinformatics / degenotate
  ☆52Updated 3 months ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆81Updated 9 months ago
• RILAB / mop
  Simple tool for capturing alignment regions with sufficient quality for genotyping.
  ☆21Updated 4 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 5 months ago
• BenjaminPeter / rangeexpansion
  ☆13Updated 8 years ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆66Updated last year
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆22Updated last year
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆20Updated 4 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆48Updated 3 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆62Updated 9 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆83Updated 4 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆49Updated 11 months ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago