☆10Jul 1, 2020Updated 6 years ago
Alternatives and similar repositories for EvoEco-ECR-brainstorming
Users that are interested in EvoEco-ECR-brainstorming are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mobile Genetic Elements Retrieving Tool☆16Feb 11, 2026Updated 5 months ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 16, 2026Updated last week
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 3 years ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- ☆28Feb 19, 2025Updated last year
- Hatch plugin for generating Python files from Protocol Buffers .proto files☆14Updated this week
- Various bioinformatics tools☆20Oct 29, 2024Updated last year
- Distribution of TEs and their relationship to genes in host genome☆25Jun 20, 2023Updated 3 years ago
- ☆23Jun 5, 2021Updated 5 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆20Mar 30, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individua…☆11Feb 21, 2018Updated 8 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- ☆19Jan 17, 2020Updated 6 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- R user dicussion group (PE&RC graduate school) -- Wageningen University☆12Jun 2, 2020Updated 6 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- FastK based version of Merqury☆33Jan 19, 2026Updated 6 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 4 years ago
- Annotation Pipeline for NLR genes☆16Dec 6, 2018Updated 7 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- add DNA sequence motifs to ggplot☆13Jun 20, 2018Updated 8 years ago
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 3 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated 11 months ago
- Chetsheets & notes from many common libraries and packages☆21Aug 29, 2025Updated 11 months ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆14Sep 4, 2024Updated last year
- de Bruijn Workflow using Integral information of Short pair End reads☆14Aug 21, 2024Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago