Alternatives and similar repositories for EvoEco-ECR-brainstorming

Users that are interested in EvoEco-ECR-brainstorming are comparing it to the libraries listed below

• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆49Updated 3 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆86Updated last year
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆26Updated 11 months ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆47Updated 4 months ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated 2 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆44Updated 6 years ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆21Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated 2 months ago
• RILAB / mop
  Simple tool for capturing alignment regions with sufficient quality for genotyping.
  ☆21Updated 4 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 6 years ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆82Updated 10 months ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 6 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated last month
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆49Updated 5 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆26Updated 9 months ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated 10 months ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆22Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆27Updated last month
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• SIWLab / Lab_Info
  info and docs for the Wright Lab
  ☆15Updated 9 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆75Updated 4 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆55Updated 3 years ago
• harvardinformatics / degenotate
  ☆53Updated 5 months ago
• mapleforest / HaploMerger2
  ☆45Updated 8 years ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 5 years ago