TEspeX - pipeline for Transposable Elements expression quantification
☆22Aug 24, 2023Updated 3 years ago
Alternatives and similar repositories for TEspeX
Users that are interested in TEspeX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 29, 2020Updated 6 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- Transposable Elements MOvement detection using LOng reads☆25Aug 20, 2026Updated 2 weeks ago
- Software for Quantifying Interspersed Repeat Expression☆69Jun 20, 2022Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆37Apr 17, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated last month
- ☆23Jun 5, 2021Updated 5 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Dec 28, 2020Updated 5 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆13Feb 21, 2023Updated 3 years ago
- ☆11Apr 20, 2018Updated 8 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆50Aug 5, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Gentle introduction to the basics of CMake and meson, and unit-testing with gtest.☆13Jun 24, 2020Updated 6 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Analysis of transposable elements☆14Aug 19, 2026Updated 2 weeks ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆25Aug 25, 2026Updated last week
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 5 years ago
- An automated RNA-seq pipeline using Nextflow☆37Dec 17, 2025Updated 8 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆128Apr 17, 2026Updated 4 months ago
- Feature selection for preserving biological trajectories in single-cell data☆21Jun 24, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Snakemake pipeline to analyze transposable element 'omics data.☆34Aug 21, 2026Updated 2 weeks ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆21Dec 20, 2023Updated 2 years ago
- ☆16May 13, 2022Updated 4 years ago
- Distribution of TEs and their relationship to genes in host genome☆25Jun 20, 2023Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆95Feb 8, 2024Updated 2 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆14Apr 11, 2026Updated 4 months ago
- ENCODE long read RNA-seq pipeline☆54Apr 13, 2026Updated 4 months ago
- An R package for performing MultiSTAAR procedure in whole-genome sequencing studies☆12Nov 14, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- ARCHIVED: this has been folded into the owlapi☆11Oct 27, 2020Updated 5 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆222Updated this week
- MEGAnE☆34Sep 13, 2023Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆107May 31, 2025Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆41Jan 14, 2025Updated last year