A pipeline for identifying indel derived neoantigens using RNA-Seq data
☆30Aug 29, 2022Updated 3 years ago
Alternatives and similar repositories for ScanNeo
Users that are interested in ScanNeo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational workflow for exitron splicing identification☆15Aug 30, 2024Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- a R package to identify neoantigens from NGS data☆18Jun 29, 2017Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆217Mar 3, 2026Updated 2 months ago
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Jul 27, 2019Updated 6 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆23Apr 10, 2025Updated last year
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 7 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Nov 14, 2021Updated 4 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 6 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆29Nov 16, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆23Jun 5, 2021Updated 4 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆117Sep 2, 2024Updated last year
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆18Mar 26, 2026Updated last month
- ☆17Feb 16, 2024Updated 2 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆24Feb 17, 2023Updated 3 years ago
- ☆175May 15, 2026Updated last week
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 4 years ago
- ☆17Jul 19, 2024Updated last year
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Junction centric alternative splicing translator☆22Oct 31, 2022Updated 3 years ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 7 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 9 months ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- alternative splicing analysis pipeline☆20Apr 9, 2021Updated 5 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Dec 28, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆91Jun 14, 2022Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63Updated this week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆69Apr 29, 2026Updated 3 weeks ago
- vSNP -- validate SNPs☆23Sep 19, 2024Updated last year