ylab-hi / ScanNeoLinks
A pipeline for identifying indel derived neoantigens using RNA-Seq data
☆30Updated 3 years ago
Alternatives and similar repositories for ScanNeo
Users that are interested in ScanNeo are comparing it to the libraries listed below
Sorting:
- ☆39Updated 5 years ago
- A continually expanding collection of RNA-seq tools☆52Updated 2 weeks ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- GLASS consortium☆42Updated 5 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆31Updated last year
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆47Updated 9 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Cellsnake tool main repo☆35Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- ☆44Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 weeks ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆10Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago