nerettilab / RepEnrich2Links
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
☆39Updated 3 years ago
Alternatives and similar repositories for RepEnrich2
Users that are interested in RepEnrich2 are comparing it to the libraries listed below
Sorting:
- Tutorial Website☆59Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 8 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆77Updated 3 years ago
- ☆30Updated 6 years ago
- ☆13Updated 7 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated 11 months ago
- A list of alternative splicing analysis resources☆44Updated 3 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆72Updated 3 weeks ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 9 years ago
- ☆69Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆74Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆22Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 11 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- ☆44Updated 2 years ago