nerettilab / RepEnrich2Links
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
☆39Updated 3 years ago
Alternatives and similar repositories for RepEnrich2
Users that are interested in RepEnrich2 are comparing it to the libraries listed below
Sorting:
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆30Updated 6 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- Genomic Association Tester☆31Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 weeks ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- ☆43Updated 2 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated 2 years ago
- Tools for analyzing DNA methylation data☆41Updated 3 weeks ago
- SingleCell Nanopore sequencing data analysis☆60Updated this week
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- 4C-seq processing pipeline☆23Updated 2 months ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- IDR☆31Updated 2 years ago
- ☆59Updated 3 years ago
- An R interface to the MEME Suite☆50Updated 7 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago
- ☆38Updated 5 years ago