nerettilab / RepEnrich2
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
☆38Updated 3 years ago
Alternatives and similar repositories for RepEnrich2:
Users that are interested in RepEnrich2 are comparing it to the libraries listed below
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Tutorial Website☆57Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆30Updated 6 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆25Updated last month
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated last week
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated last year
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- ☆54Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- Package for analysis and characterization of differential TADs☆23Updated 2 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆21Updated 2 months ago
- IDR☆31Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated 2 months ago
- An R interface to the MEME Suite☆49Updated 5 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- 4C-seq processing pipeline☆23Updated 10 months ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- Genomic Association Tester☆30Updated last year
- RNA editing tests☆16Updated 4 years ago