nerettilab / RepEnrich2Links
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
☆41Updated 3 years ago
Alternatives and similar repositories for RepEnrich2
Users that are interested in RepEnrich2 are comparing it to the libraries listed below
Sorting:
- Tutorial Website☆61Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆90Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- ☆47Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- ☆72Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- 4C-seq processing pipeline☆26Updated 7 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated last week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated 2 weeks ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 weeks ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- ☆13Updated 8 years ago