erhard-lab / grandRLinks
R package for nucleotide conversion sequencing data analysis
☆16Updated 10 months ago
Alternatives and similar repositories for grandR
Users that are interested in grandR are comparing it to the libraries listed below
Sorting:
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆27Updated last year
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- simplified cellranger for long-read data☆19Updated 4 months ago
- ☆15Updated 3 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆16Updated 7 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 10 months ago
- ☆16Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆25Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- Network Visualization using both GUI and Programming☆29Updated 7 months ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Updated 5 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆20Updated 7 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Updated last month
- Snakemake pipeline for running MAJIQ☆23Updated 2 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Junction centric alternative splicing translator☆21Updated 3 years ago
- ☆16Updated 10 months ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- A collection of perl scripts for NGS analysis☆17Updated last year
- splicing and feature maps for RBPs☆25Updated 3 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- interactive plots for differential expression analysis☆34Updated 6 months ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Updated 3 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago