A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
☆22Jul 31, 2023Updated 2 years ago
Alternatives and similar repositories for SCATS
Users that are interested in SCATS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 4 months ago
- ☆19May 31, 2024Updated 2 years ago
- ☆23Jun 5, 2021Updated 5 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Feb 16, 2024Updated 2 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆20Jan 13, 2021Updated 5 years ago
- Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq☆19Dec 6, 2022Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 9 years ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 2 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆21Jan 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Sep 21, 2021Updated 4 years ago
- R package to explore active transposable elements with RNA-seq data☆21Nov 25, 2022Updated 3 years ago
- Filter and prioritize fusion calls☆20May 26, 2026Updated last month
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 7 months ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆17Feb 2, 2022Updated 4 years ago
- ☆17May 22, 2025Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Jul 17, 2026Updated last week
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆72Jul 8, 2026Updated 2 weeks ago
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆21Jun 12, 2023Updated 3 years ago
- Structural variant benchmark☆24Mar 4, 2025Updated last year
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆95Apr 29, 2026Updated 2 months ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Jun 16, 2022Updated 4 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆33Nov 11, 2025Updated 8 months ago
- Command-line tool for the visualization of splicing events across multiple samples☆143Jun 28, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 7 months ago
- Alternative splicing resource☆58Mar 31, 2018Updated 8 years ago
- ☆67Mar 19, 2026Updated 4 months ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆37Apr 1, 2025Updated last year
- ☆17Jul 19, 2024Updated 2 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 5 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago