huyustats / SCATS
A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
☆22Updated last year
Alternatives and similar repositories for SCATS:
Users that are interested in SCATS are comparing it to the libraries listed below
- ☆45Updated 6 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 7 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated 10 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- RNA editing tests☆16Updated 4 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated 3 weeks ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 9 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- ☆17Updated 6 years ago
- ☆29Updated 3 weeks ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆24Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- interactive visualization of single-cell transcriptomes☆11Updated last year
- single-cell clustering based on alternative splicing landscapes☆18Updated 11 months ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated this week
- RAGE-seq scripts☆18Updated 3 years ago
- ☆37Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆17Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- ☆20Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- ☆16Updated 8 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year