rcastelo / atenaView external linksLinks
Analysis of transposable elements
☆13Dec 4, 2025Updated 2 months ago
Alternatives and similar repositories for atena
Users that are interested in atena are comparing it to the libraries listed below
Sorting:
- ☆10Jan 29, 2020Updated 6 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- Distribution of TEs and their relationship to genes in host genome☆24Jun 20, 2023Updated 2 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Aug 20, 2020Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 24, 2025Updated 6 months ago
- PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)☆19Nov 10, 2024Updated last year
- TEspeX - pipeline for Transposable Elements expression quantification☆22Aug 24, 2023Updated 2 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆30Jan 19, 2026Updated 3 weeks ago
- ☆23Jun 5, 2021Updated 4 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Sep 23, 2020Updated 5 years ago
- Repositorio de apuntes y código del curso Introducción a la bioinformática e investigación reproducible para análisis genéticos del semes…☆12Jun 1, 2017Updated 8 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- ☆36Nov 3, 2024Updated last year
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆45Jul 3, 2025Updated 7 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 2 years ago
- An easy-to-use and interactive web application for FragPipe☆14Jul 28, 2025Updated 6 months ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 3 years ago
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- ☆14Aug 16, 2024Updated last year
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- ☆11Dec 29, 2020Updated 5 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers☆12Jan 30, 2023Updated 3 years ago
- ☆11Aug 21, 2024Updated last year
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- ☆11Sep 1, 2022Updated 3 years ago
- Daily usage script recording☆12Jan 17, 2026Updated 3 weeks ago
- Newick tree processing☆13Updated this week
- bisulfite sequencing pipeline from fastq to methylation reports☆13Nov 9, 2025Updated 3 months ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Dec 15, 2023Updated 2 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Oct 30, 2024Updated last year