kbvstmd / ProGeo-neoLinks
a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection
☆24Updated 3 years ago
Alternatives and similar repositories for ProGeo-neo
Users that are interested in ProGeo-neo are comparing it to the libraries listed below
Sorting:
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Published at Bioinformatics☆12Updated last year
- 🏺 Exploring novel tumor epitope identification☆38Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- Snakemake workflow for neoantigen prediction☆14Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Updated 5 years ago
- ☆13Updated 5 years ago
- ☆19Updated 7 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆20Updated 7 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆24Updated 4 months ago
- ☆23Updated 3 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- Code to run OncoSig Analyses☆18Updated 5 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Updated 4 years ago
- Overview of GDC Harmonization Workflows☆35Updated 2 years ago