kbvstmd / ProGeo-neoLinks
a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection
☆24Updated 3 years ago
Alternatives and similar repositories for ProGeo-neo
Users that are interested in ProGeo-neo are comparing it to the libraries listed below
Sorting:
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 3 years ago
- Snakemake workflow for neoantigen prediction☆14Updated last year
- Published at Bioinformatics☆12Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆25Updated 8 months ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- ☆17Updated 3 years ago
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆18Updated 4 years ago
- ☆12Updated 6 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- Python package to annotate and visualize gene fusions.☆64Updated 10 months ago
- ☆13Updated 4 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆25Updated 11 months ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆24Updated last month
- Chimeric transcript discovery☆9Updated 7 years ago
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 5 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 6 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 6 months ago