CMPG / signetView external linksLinks
An R package to detect selection in biological pathways
☆14Jan 19, 2024Updated 2 years ago
Alternatives and similar repositories for signet
Users that are interested in signet are comparing it to the libraries listed below
Sorting:
- A coalsecent simulator with selection☆22Dec 2, 2020Updated 5 years ago
- Tools for inference of the DFE with dadi☆14Apr 16, 2021Updated 4 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 7 years ago
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆14May 19, 2023Updated 2 years ago
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- ☆13Jun 6, 2023Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated 10 months ago
- A toolbox for C++ devs wanting to build geospatial population genetics simulators !☆11May 4, 2025Updated 9 months ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Feb 21, 2025Updated 11 months ago
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- ☆30Oct 14, 2022Updated 3 years ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- ☆13Mar 7, 2021Updated 4 years ago
- Topology weighting from unphased genotypes of any ploidy☆20Dec 16, 2025Updated last month
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Dec 4, 2025Updated 2 months ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Aug 29, 2017Updated 8 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆19Apr 9, 2024Updated last year
- An R Package to build and simulate coalescent models☆20Updated this week
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 10 months ago
- simple examples of using supervised machine learning for population genetics inference☆39Oct 26, 2017Updated 8 years ago
- Genome Analysis Workshop (Jena 2016) material☆18Mar 3, 2017Updated 8 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Feb 6, 2026Updated last week
- ☆20Sep 10, 2020Updated 5 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 3 years ago
- Population Genetics Hackathon, to be held at NESCent on March 16-20, 2015☆18Jul 13, 2015Updated 10 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago