CMPG / signetLinks
An R package to detect selection in biological pathways
☆14Updated last year
Alternatives and similar repositories for signet
Users that are interested in signet are comparing it to the libraries listed below
Sorting:
- machine learning applications for dadi☆16Updated 9 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 3 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 11 months ago
- ☆20Updated 5 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 8 months ago
- R-package: Calculation of haplotype blocks and libraries☆34Updated 3 months ago
- Work for the tree sequence inference paper.☆23Updated 5 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆27Updated 6 years ago
- ☆14Updated last month
- Transfer coordinates across genomes☆23Updated 5 months ago
- ☆28Updated 2 years ago
- ☆13Updated 4 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Updated 8 years ago
- Reference genome quality scores☆21Updated 4 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆26Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated 2 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 5 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated 3 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Repository for pipeline code☆26Updated last year