marieBvr / TEs_genes_relationship_pipelineView external linksLinks
Distribution of TEs and their relationship to genes in host genome
☆24Jun 20, 2023Updated 2 years ago
Alternatives and similar repositories for TEs_genes_relationship_pipeline
Users that are interested in TEs_genes_relationship_pipeline are comparing it to the libraries listed below
Sorting:
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Aug 20, 2020Updated 5 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84May 25, 2021Updated 4 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆30Updated this week
- Analysis of transposable elements☆13Dec 4, 2025Updated 2 months ago
- ☆27Feb 19, 2025Updated 11 months ago
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 2 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆25Oct 31, 2023Updated 2 years ago
- A shiny application to visualize MCscan result☆38Oct 7, 2022Updated 3 years ago
- ☆16Jan 14, 2026Updated last month
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- ☆23Jun 5, 2021Updated 4 years ago
- Dfam Transposable Element Tools Docker container.☆101Dec 17, 2025Updated 2 months ago
- ☆13Updated this week
- ☆10Jan 29, 2020Updated 6 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- Software for detecting transposable element insertions from next-generation sequencing data☆10Feb 24, 2023Updated 2 years ago
- ☆10Jul 1, 2020Updated 5 years ago
- ☆10May 22, 2025Updated 8 months ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated 3 weeks ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆28Jun 17, 2025Updated 8 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆192Updated this week
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- Synteny Mapping and Analysis Program☆30Feb 6, 2026Updated last week
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆53Nov 29, 2024Updated last year
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Conservation analysis of homologous proteins with Python☆13Jul 11, 2021Updated 4 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago