shizhuoxing / scISA-Tools
single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single molecule resolution.
☆23Updated 5 months ago
Alternatives and similar repositories for scISA-Tools:
Users that are interested in scISA-Tools are comparing it to the libraries listed below
- RNA editing tests☆16Updated 4 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆15Updated 3 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆21Updated last week
- interactive visualization of single-cell transcriptomes☆11Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 8 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- ATAC-seq processing pipeline☆31Updated 2 years ago
- ☆16Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- ☆24Updated last year
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆30Updated 7 months ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 6 years ago
- single-cell clustering based on alternative splicing landscapes☆16Updated 9 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆20Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- ☆23Updated 3 years ago
- RiboPlotR package for Ribo-plot☆14Updated last year
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆19Updated 2 weeks ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆16Updated 5 months ago
- ☆24Updated 2 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆18Updated 9 months ago
- ☆33Updated last year