shizhuoxing / scISA-ToolsLinks
single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single molecule resolution.
☆24Updated 10 months ago
Alternatives and similar repositories for scISA-Tools
Users that are interested in scISA-Tools are comparing it to the libraries listed below
Sorting:
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated last month
- ☆32Updated 11 months ago
- ☆17Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- RiboPlotR package for Ribo-plot☆15Updated last year
- ☆20Updated last year
- interactive visualization of single-cell transcriptomes☆11Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- ☆49Updated 10 months ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆10Updated 5 years ago
- Detection and couting alternative TSS in single cells☆14Updated last year
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 10 months ago
- ☆27Updated 7 months ago
- ☆27Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Pipeline for Cut&Tag analysis☆21Updated last month
- ☆24Updated 4 years ago
- ☆17Updated 11 months ago