shizhuoxing / scISA-ToolsLinks
single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single molecule resolution.
☆26Updated last year
Alternatives and similar repositories for scISA-Tools
Users that are interested in scISA-Tools are comparing it to the libraries listed below
Sorting:
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated 3 weeks ago
- ☆32Updated last year
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- ☆52Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated last month
- Tutorial Website☆60Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆17Updated 2 weeks ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- Micro DNA identification☆24Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆57Updated 3 weeks ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆18Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 5 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆21Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 5 years ago
- An R package to time somatic mutations☆65Updated 4 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago