shizhuoxing / scISA-ToolsLinks
single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single molecule resolution.
☆26Updated last year
Alternatives and similar repositories for scISA-Tools
Users that are interested in scISA-Tools are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated this week
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated 6 months ago
- ☆51Updated last year
- RNA editing tests☆17Updated 5 years ago
- Tutorial Website☆61Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆54Updated last year
- ATAC-seq processing pipeline☆34Updated 3 years ago
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- ☆24Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆16Updated last week
- An R package to time somatic mutations☆64Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- interactive visualization of single-cell transcriptomes☆11Updated last year
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆20Updated last year
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- ☆26Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago