shizhuoxing / scISA-Tools
single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single molecule resolution.
☆24Updated 9 months ago
Alternatives and similar repositories for scISA-Tools:
Users that are interested in scISA-Tools are comparing it to the libraries listed below
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆26Updated 3 weeks ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated last month
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- ☆32Updated 10 months ago
- ☆49Updated 9 months ago
- ☆17Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- single-cell clustering based on alternative splicing landscapes☆20Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- interactive visualization of single-cell transcriptomes☆11Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated 2 years ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆30Updated 3 months ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated last month
- Assessing the reproducibility of proccessed ChIP-seq peaks☆12Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Micro DNA identification☆23Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆19Updated last year
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- ☆33Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated last month