Alternatives and similar repositories for Bullseye

Users that are interested in Bullseye are comparing it to the libraries listed below

• wanqingshao / TE_expression_in_scRNAseq
  ☆20Updated 5 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆26Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated 2 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆34Updated 3 years ago
• CebolaLab / CUTandTAG
  Analysis pipeline for CUT&TAG data
  ☆22Updated 5 years ago
• WRui / Post_Implantation
  ☆30Updated 4 years ago
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆18Updated 4 years ago
• MengjunWu / TCseq
  An R package for time course sequencing data analysis
  ☆21Updated 2 years ago
• theislab / GWAS-scRNAseq-Integration
  A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS
  ☆12Updated 7 years ago
• dbrg77 / ISSAAC-seq
  ☆19Updated 2 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 6 months ago
• cit-bioinfo / mMCP-counter
  Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
  ☆12Updated 3 years ago
• wenweixiong / MARVEL
  ☆54Updated last year
• prabhakarlab / DUBStepR
  Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data
  ☆20Updated 3 years ago
• RebuffetLucas / Meta_NK_Project
  ☆11Updated 6 months ago
• lydiaMyr / ImmuCellAI-mouse
  ☆10Updated 8 months ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 3 years ago
• Henikoff / scCUT-Tag
  ☆18Updated 2 years ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆32Updated 2 months ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆19Updated 2 years ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 5 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 7 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 10 months ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆21Updated 2 weeks ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• ijuric / MAPS
  ☆19Updated 2 years ago
• lkmklsmn / MitoTrace
  ☆18Updated last year
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆63Updated 2 months ago