xuxif / DeepMEILinks
A CNN model to identify MEIs in WGS
☆12Updated 9 months ago
Alternatives and similar repositories for DeepMEI
Users that are interested in DeepMEI are comparing it to the libraries listed below
Sorting:
- Automated Detection and Qualification of Differential Methylation☆14Updated 2 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 9 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Updated 9 months ago
- ☆13Updated 3 years ago
- Short Tandem Repeat disease loci resource☆24Updated last week
- Structural variant (SV) analysis tools☆39Updated last year
- ☆25Updated 7 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- ☆16Updated 10 months ago
- Sample Contamination Estimate from VCF☆20Updated last year
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- ☆12Updated 4 years ago
- Genome browser hub for the T2T genomes and resources☆25Updated 2 months ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆12Updated 7 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- A python wrapper around SURVIVOR☆20Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆19Updated this week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated last month
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 5 months ago
- ☆20Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 3 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago