RNA-Seq analysis workflow
☆105Jul 14, 2021Updated 4 years ago
Alternatives and similar repositories for RASflow
Users that are interested in RASflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq workflow using STAR and DESeq2☆354Dec 18, 2025Updated 3 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Jul 18, 2017Updated 8 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆69Mar 19, 2026Updated 3 weeks ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Oct 2, 2025Updated 6 months ago
- ☆23Jun 5, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Documentation of the Snakemake-Workflows project☆157Feb 2, 2022Updated 4 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆402Mar 30, 2026Updated last week
- RNAseq analysis notes from Ming Tang☆1,076Nov 15, 2021Updated 4 years ago
- ☆14May 23, 2016Updated 9 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated last month
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated 2 years ago
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆105Jul 1, 2022Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- 🧪 Optimized protocol for m6A-SAC-seq☆12Jun 16, 2025Updated 9 months ago
- STAR, cufflinks, cluster, DESeq2, GO analysis☆14Jun 27, 2020Updated 5 years ago
- (formerly eelpond) an automated RNA-Seq workflow system☆27Oct 14, 2020Updated 5 years ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆170Feb 24, 2026Updated last month
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆69Apr 26, 2024Updated last year
- Statistical Analysis of RNA-Seq Tools☆108Oct 9, 2025Updated 6 months ago
- ☆12Jan 8, 2026Updated 3 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Pipeline for Analysis of ChIP-Seq data☆10May 8, 2024Updated last year
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,243Updated this week
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 5 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- documentation for trackViewer☆29Aug 6, 2019Updated 6 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆15Apr 14, 2025Updated 11 months ago
- ATAC-seq snakemake pipeline☆90Feb 13, 2020Updated 6 years ago
- TransDecoder source☆304Mar 22, 2026Updated 3 weeks ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Feb 24, 2020Updated 6 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Mar 8, 2024Updated 2 years ago
- Transcripts annotation and GO enrichment Fisher tests☆27Apr 28, 2023Updated 2 years ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated this week
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Apr 22, 2021Updated 4 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago