johnssproul / RepeatProfilerLinks
☆26Updated 8 months ago
Alternatives and similar repositories for RepeatProfiler
Users that are interested in RepeatProfiler are comparing it to the libraries listed below
Sorting:
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 3 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- A (very) simple script to QC Hi-C data.☆26Updated 10 months ago
- read and analyse RepeatMasker output☆26Updated 2 years ago
- ☆29Updated last year
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆26Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 9 months ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆59Updated last month
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- ☆33Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- ☆44Updated 8 years ago
- Chromosome-level synteny plotting using orthologous regions☆30Updated last year