johnssproul / RepeatProfiler
☆24Updated this week
Alternatives and similar repositories for RepeatProfiler:
Users that are interested in RepeatProfiler are comparing it to the libraries listed below
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Transposable Elements MOvement detection using LOng reads☆21Updated last month
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- ☆43Updated 8 years ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- ☆32Updated 4 years ago
- A (very) simple script to QC Hi-C data.☆25Updated last month
- A tool for evaluate long-read de novo assembly results☆42Updated 4 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 6 months ago
- read and analyse RepeatMasker output☆24Updated last year
- Chromosome-level synteny plotting using orthologous regions☆28Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- A Nextflow pipeline for evaluating assembly quality☆27Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 months ago
- Improved Phased Assembler☆27Updated 2 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆24Updated 2 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated last month
- Pan-genome Construction and Population Structure Variation Calling pipeline☆36Updated 4 months ago
- Tools and Utilities for msmc and msmc2☆46Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago