cozygene / bisqueLinks
An R toolkit for estimation of cell composition from bulk expression data
☆78Updated 3 months ago
Alternatives and similar repositories for bisque
Users that are interested in bisque are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆63Updated 5 years ago
- ☆55Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- ☆73Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆89Updated 3 months ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Normalize CITEseq Data☆66Updated 5 months ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- scWGCNA☆61Updated 2 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆41Updated 5 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 9 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated last month
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆72Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 6 months ago