cozygene / bisqueLinks
An R toolkit for estimation of cell composition from bulk expression data
☆74Updated last week
Alternatives and similar repositories for bisque
Users that are interested in bisque are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- ☆68Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- ☆55Updated 4 years ago
- ☆61Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆88Updated 11 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated 11 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Create stacked violin plot☆49Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 3 years ago
- ☆63Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- Mouse cell atlas☆59Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- ☆57Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- ☆46Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆69Updated 3 years ago