Hoffmann-Lab / TEdetectionEvaluationLinks
Tool comparison for detecting differentially expressed individual transposable elements
☆11Updated 3 years ago
Alternatives and similar repositories for TEdetectionEvaluation
Users that are interested in TEdetectionEvaluation are comparing it to the libraries listed below
Sorting:
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated this week
- ☆32Updated last year
- ☆12Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated 6 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 4 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Tutorial Website☆61Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆16Updated last week
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- An Optimized Nested TAD caller for Hi-C data☆24Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆16Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- ☆47Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆71Updated 11 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- ☆22Updated 2 years ago
- ☆13Updated 8 years ago