Tool comparison for detecting differentially expressed individual transposable elements
☆11Jan 7, 2022Updated 4 years ago
Alternatives and similar repositories for TEdetectionEvaluation
Users that are interested in TEdetectionEvaluation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆22Apr 16, 2026Updated last month
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated 10 months ago
- ☆15Aug 9, 2024Updated last year
- TEspeX - pipeline for Transposable Elements expression quantification☆22Aug 24, 2023Updated 2 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆93Jan 26, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆33Jun 12, 2024Updated last year
- ☆21Nov 15, 2020Updated 5 years ago
- Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing☆23Oct 28, 2025Updated 6 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Dec 11, 2025Updated 5 months ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Mar 9, 2026Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆90Feb 8, 2024Updated 2 years ago
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆14Apr 11, 2026Updated last month
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆282May 11, 2026Updated last week
- Find and characterise transposable element insertions☆20May 26, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Sep 5, 2024Updated last year
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Dec 28, 2020Updated 5 years ago
- R package to explore active transposable elements with RNA-seq data☆21Nov 25, 2022Updated 3 years ago
- ☆23Jun 5, 2021Updated 4 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 5 months ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆30May 5, 2023Updated 3 years ago
- DNA copy number detection from off-target sequence data☆34May 17, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Software for Quantifying Interspersed Repeat Expression☆66Jun 20, 2022Updated 3 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- ☆12Dec 14, 2021Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆19Apr 14, 2026Updated last month
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- ☆12Dec 1, 2021Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- iread☆25Jul 16, 2021Updated 4 years ago
- A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.☆32May 8, 2026Updated last week
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 8 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- mosaicMPI: mosaic multi-resolution program integration☆12May 13, 2026Updated last week
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- TFFM framework☆13Sep 22, 2025Updated 7 months ago