wagnerlab-berkeley / CompassLinks
☆33Updated 7 months ago
Alternatives and similar repositories for Compass
Users that are interested in Compass are comparing it to the libraries listed below
Sorting:
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆81Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆127Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- ☆23Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆111Updated 7 months ago
- ☆125Updated 3 years ago
- Codes used in pan-T cell analysis☆63Updated 2 years ago
- ☆58Updated last year
- Codes for the scPLC project☆69Updated 2 years ago
- ☆50Updated last year
- ☆31Updated 3 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆52Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆32Updated 9 months ago
- Methods for decontamination of single cell data☆48Updated 8 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆84Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Construct Tumor Transition Zone Microenvironment☆49Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Updated 3 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆63Updated 2 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆85Updated last year
- Mollecular Functional Portraits☆43Updated last year
- ☆32Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h …☆98Updated 4 months ago
- ☆47Updated 3 years ago
- Senescent Cell Identification☆44Updated last year
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago