KChen-lab / bindSC
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
☆34Updated last year
Alternatives and similar repositories for bindSC:
Users that are interested in bindSC are comparing it to the libraries listed below
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 11 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 4 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- ☆32Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆39Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆56Updated 4 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated last week
- Functions for single cell data analysis☆29Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- ☆49Updated 6 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆32Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated last month
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆43Updated last month
- ☆30Updated 6 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆39Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 6 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆19Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆27Updated last year
- SCDC☆44Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆23Updated last year
- ☆59Updated 5 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆23Updated 6 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year