JSB-UCLA / scPNMF
☆13Updated last year
Alternatives and similar repositories for scPNMF
Users that are interested in scPNMF are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- analysis script for GBM single cell RNA seq data☆18Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 6 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆16Updated last month
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆35Updated 2 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 7 months ago
- ☆10Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- ☆12Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆22Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 7 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Updated 4 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 11 months ago