JSB-UCLA / scPNMF
☆13Updated last year
Alternatives and similar repositories for scPNMF:
Users that are interested in scPNMF are comparing it to the libraries listed below
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated last month
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 10 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆52Updated 3 months ago
- ☆39Updated 3 years ago
- ☆10Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆22Updated last year
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 2 years ago
- Functions for single cell data analysis☆29Updated 3 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆21Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆20Updated 10 months ago
- ☆44Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated 11 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 2 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆22Updated 11 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆22Updated this week
- Estimation of Single-Cell Potency with Single Cell Entropy☆38Updated last year
- ☆16Updated 10 months ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆16Updated last year
- ☆16Updated 5 years ago