Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies
☆17Mar 1, 2022Updated 4 years ago
Alternatives and similar repositories for IsoSeqSim
Users that are interested in IsoSeqSim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 2 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆229Updated this week
- Mapping of GENCODE gene annotation set files to older assembies☆14Apr 16, 2026Updated 2 months ago
- ☆39Apr 25, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Diverse sampling for single-cell datasets☆17Mar 22, 2026Updated 2 months ago
- ☆27May 8, 2022Updated 4 years ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Jun 1, 2026Updated 2 weeks ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 4 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆38Nov 8, 2023Updated 2 years ago
- ☆20Oct 5, 2022Updated 3 years ago
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 10 months ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- ☆14May 26, 2026Updated 3 weeks ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Oct 2, 2025Updated 8 months ago
- This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward…☆20Jun 11, 2026Updated last week
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆45Mar 9, 2023Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆270May 21, 2026Updated 3 weeks ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆15Apr 8, 2026Updated 2 months ago
- ☆17Mar 11, 2024Updated 2 years ago
- GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter templa…☆13Mar 21, 2023Updated 3 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆110Apr 22, 2025Updated last year
- ☆18Jan 13, 2025Updated last year
- ☆10Sep 20, 2022Updated 3 years ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 3 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Jun 9, 2020Updated 6 years ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 6 months ago
- Snakemake pipeline for microexon discovery and quantification☆21Jan 16, 2025Updated last year
- A box of genomics tools☆22Jun 10, 2026Updated last week
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 4 months ago