Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences
☆15Jul 18, 2024Updated 2 years ago
Alternatives and similar repositories for iDeLUCS
Users that are interested in iDeLUCS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 5 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- Exploring Isoform-specific interactions☆13Sep 16, 2025Updated 10 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.☆28Aug 31, 2022Updated 3 years ago
- ☆10Apr 24, 2024Updated 2 years ago
- Error correction of long reads☆16Jan 30, 2026Updated 5 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Jun 11, 2026Updated last month
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆17Mar 1, 2022Updated 4 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 5 years ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- ☆19Jun 3, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆20Dec 20, 2023Updated 2 years ago
- Tool for drawing gene structures from genome annotation files.☆22Jun 20, 2026Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆16Oct 8, 2025Updated 9 months ago
- ☆13Jan 23, 2025Updated last year
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated 4 months ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 2 years ago
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆53Feb 4, 2025Updated last year
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated 9 months ago
- Github Action to deploy conda package to Anaconda repository☆11May 28, 2021Updated 5 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ATaRVa - Analysis of Tandem Repeat Variation☆24Updated this week
- tandemtwister: Tandem repeat genotyping tool☆19Feb 1, 2026Updated 5 months ago
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Aug 7, 2023Updated 2 years ago
- ☆21Jan 11, 2024Updated 2 years ago
- ☆29Jun 1, 2026Updated last month
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆21Mar 31, 2024Updated 2 years ago