Kari-Genomics-Lab / iDeLUCS
Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences
☆13Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for iDeLUCS
- Comprehensive and scalable differential splicing analyses☆13Updated 5 months ago
- ☆10Updated 10 months ago
- ☆27Updated 6 months ago
- Analyse RNA feature distributions.☆15Updated 2 weeks ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- ☆9Updated 3 years ago
- ☆15Updated 2 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month
- A method for measuring chromosome-specific telomere length from long reads☆20Updated 6 months ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆11Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆17Updated this week
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- A tool to detect structural variant☆18Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆21Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆17Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆33Updated 2 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 4 months ago
- Reconstruction of focal amplifications with long reads☆13Updated this week
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆22Updated 6 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 8 months ago
- ☆29Updated 2 years ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆9Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆36Updated last week
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Micro DNA identification☆22Updated 3 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆11Updated 3 months ago